July 2007 - graph-tool - archives.skewed.de

Re: [graph-tool] problems with compiling graph-tool-1.1.2
by Tiago de Paula Peixoto 11 Jul '07

11 Jul '07

On 07/11/2007 11:35 AM, Rui Carvalho wrote: > Hi Tiago, hi Andrea > >> It's quite alright. If the problem turns out to be what I >think it >> is, this is not your fault at all, and is a problem >with GCC. What >> you have to do is to run configure, as >you did, and then compile >> it, as such: > >> $ ./configure --disable-visibility >> $ make > > Yes, I did this and the problem is exactly the same. The error > message is exactly as before: it does not perform the final link as > Andrea pointed out. I think you have to clean up the setup first. Do it like this, this time: $ make distclean $ ./configure --disable-visibility $ make This has to work. ;-) If it doesn't, then please send me again the results, even if they look exactly the same. Cheers, -- Tiago de Paula Peixoto <tiago(a)forked.de> 09 F9 11 02 9D 74 E3 5B D8 41 56 C5 63 56 88 C0

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Re: [graph-tool] problems with compiling graph-tool-1.1.2
by Tiago de Paula Peixoto 11 Jul '07

11 Jul '07

On 07/11/2007 07:14 AM, Rui Carvalho wrote: > Hi, > > Here's the output of "gcc -v": > > Using built-in specs. > Target: i486-linux-gnu > Configured with: ../src/configure -v --enable-languages=c,c++,fortran,objc,obj-c++,treelang --prefix=/usr --enable-shared --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --enable-nls --program-suffix=-4.1 --enable-__cxa_atexit --enable-clocale=gnu --enable-libstdcxx-debug --enable-mpfr --enable-checking=release i486-linux-gnu > Thread model: posix > gcc version 4.1.2 (Ubuntu 4.1.2-0ubuntu4) > > I attach also the ouput I get from "./configure --disable-visibility" > > I'm new to linux, so this is probably a beginners mistake -sorry about this. > It's quite alright. If the problem turns out to be what I think it is, this is not your fault at all, and is a problem with GCC. What you have to do is to run configure, as you did, and then compile it, as such: $ ./configure --disable-visibility $ make You did only the first step, and now you must run "make" to compile it. Please do that and tell me if you see the same errors as before. And don't worry about asking questions, this is why this list exists! :-) Cheers, -- Tiago de Paula Peixoto <tiago(a)forked.de> 09 F9 11 02 9D 74 E3 5B D8 41 56 C5 63 56 88 C0

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Re: [graph-tool] problems with compiling graph-tool-1.1.2
by Andrea Perna 11 Jul '07

11 Jul '07

I have exactly the same configuration Kubuntu feisty, gcc 4.1.2, Boost 1.33.1 ecc. installed on a macbook. I used to have the same problem at the end of compilation (it does not come to perform the final link, I think). ld -v GNU ld version 2.17.50 20070103 Ubuntu ./configure --disable-visibility make (su) make install works for me. Cheers, Andrea On Wednesday 11 July 2007, Rui Carvalho wrote: > Hi, > > Here's the output of "gcc -v": > > Using built-in specs. > Target: i486-linux-gnu > Configured with: ../src/configure -v > --enable-languages=c,c++,fortran,objc,obj-c++,treelang --prefix=/usr > --enable-shared --with-system-zlib --libexecdir=/usr/lib > --without-included-gettext --enable-threads=posix --enable-nls > --program-suffix=-4.1 --enable-__cxa_atexit --enable-clocale=gnu > --enable-libstdcxx-debug --enable-mpfr --enable-checking=release > i486-linux-gnu Thread model: posix > gcc version 4.1.2 (Ubuntu 4.1.2-0ubuntu4) > > I attach also the ouput I get from "./configure --disable-visibility" > > I'm new to linux, so this is probably a beginners mistake -sorry about > this. > > Thanks, > Rui > > -----Original Message----- > From: graph-tool-bounces(a)forked.de [mailto:graph-tool-bounces@forked.de] On > Behalf Of Tiago de Paula Peixoto Sent: 11 July 2007 03:18 > To: Main discussion list for the graph-tool project > Subject: Re: [graph-tool] problems with compiling graph-tool-1.1.2 > > On 07/10/2007 08:22 PM, Rui Carvalho wrote: > > 32 bit architecture; > > Python 2.4 > > Boost 1.33.1 > > Gcc 4.1.2 > > Expat 1.95.8-3.4build1 > > Hi. > > It should be compiling cleanly for your case. What is the complete output > of "gcc -v"? Maybe it is a patched or pre-release version of GCC. I can > compile it fine on my 32 bit system with the same compiler and libraries. > In any case, it seems to me that visibility is somehow broken in your > setup. Could you try compiling with the "--disable-visibility" option as I > described before and tell me the result? > > Thanks. > > -- > Tiago de Paula Peixoto <tiago(a)forked.de> > > 09 F9 11 02 9D 74 E3 5B D8 41 56 C5 63 56 88 C0

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Re: [graph-tool] problems with compiling graph-tool-1.1.2
by Tiago de Paula Peixoto 11 Jul '07

11 Jul '07

On 07/10/2007 08:22 PM, Rui Carvalho wrote: > 32 bit architecture; > Python 2.4 > Boost 1.33.1 > Gcc 4.1.2 > Expat 1.95.8-3.4build1 Hi. It should be compiling cleanly for your case. What is the complete output of "gcc -v"? Maybe it is a patched or pre-release version of GCC. I can compile it fine on my 32 bit system with the same compiler and libraries. In any case, it seems to me that visibility is somehow broken in your setup. Could you try compiling with the "--disable-visibility" option as I described before and tell me the result? Thanks. -- Tiago de Paula Peixoto <tiago(a)forked.de> 09 F9 11 02 9D 74 E3 5B D8 41 56 C5 63 56 88 C0

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Re: [graph-tool] problems with compiling graph-tool-1.1.2
by Rui Carvalho 10 Jul '07

10 Jul '07

Hi, Sorry I forgot the obvious :) -here it is 32 bit architecture; Python 2.4 Boost 1.33.1 Gcc 4.1.2 Expat 1.95.8-3.4build1 Thanks a lot, Rui >Hi. Please tell me what GCC version are you using, and >what is your >architecture (32 or 64 bit). If you're compiling on a 64 >bit machine, >please try using the "--disable-visibility" configure >option: > >./configure --disable-visibility >make >Cheers, >-- >Tiago de Paula Peixoto <tiago at forked.de>

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Re: [graph-tool] problems with compiling graph-tool-1.1.2
by Tiago de Paula Peixoto 10 Jul '07

10 Jul '07

On 07/10/2007 03:52 PM, Rui Carvalho wrote: > Hi, > > I'm trying to compile graph-tool on ubuntu 7.04, but I'm running into > problems. I attach a file with the output from make. > > Any ideas? Hi. Please tell me what GCC version are you using, and what is your architecture (32 or 64 bit). If you're compiling on a 64 bit machine, please try using the "--disable-visibility" configure option: ./configure --disable-visibility make Cheers, -- Tiago de Paula Peixoto <tiago(a)forked.de> 09 F9 11 02 9D 74 E3 5B D8 41 56 C5 63 56 88 C0

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problems with compiling graph-tool-1.1.2
by Rui Carvalho 10 Jul '07

10 Jul '07

Hi, I'm trying to compile graph-tool on ubuntu 7.04, but I'm running into problems. I attach a file with the output from make. Any ideas? Thanks a lot, Rui ________________________________________ Dr. Rui Carvalho http://www.casa.ucl.ac.uk/rui/ Senior Research Fellow Centre for Advanced Spatial Analysis University College London 1-19 Torrington Place Gower Street London WC1E 6BT, U.K.

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graph-tool 1.1.2
by Tiago de Paula Peixoto 07 Jul '07

07 Jul '07

Hi. I'm pleased to announce version 1.1.2 of graph-tool. This version is a bugfix release against version 1.1.1, but contains some important improvements. Changes ======= * graph-tool now can run several algorithms in parallel, using OpenMP. For more details see: https://projects.forked.de/graph-tool/wiki/ParallelAlgorithms * graph-tool now is licensed under GPL version 3 or above * fixed a bug with graph assortativity calculation * added support for betweenness centrality For a complete list of changes see http://projects.forked.de/graph-tool/log/trunk?action=stop_on_copy&rev=107&… Download ======== Download information is available on the website: http://projects.forked.de/graph-tool/wiki/GraphToolDownload Enjoy! -- Tiago de Paula Peixoto <tiago(a)forked.de>

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