Hi folks, is anyone using graph-tool with Fedora 15?
Using Fedora 15 (gcc version 4.6.0 20110603) compiling the stable release or the latest git fails for me:
# uname -a Linux localhost.localdomain 2.6.40.4-5.fc15.x86_64 #1 SMP Tue Aug 30 14:38:32 UTC 2011 x86_64 x86_64 x86_64 GNU/Linux
using boost 1.46.0
./configure --with-numpy=/usr/lib64/python2.7/site-packages/numpy --with-scipy=/usr/lib64/python2.7/site-packages/scipy
make
/usr/include/boost/graph/graph_traits.hpp:222:47: error: no type named 'graph_property_type' in 'const class boost::reverse_graph<boost::filtered_graph<boost::adjacency_list<boost::vecS, boost::vecS, boost::bidirectionalS, boost::no_property, boost::property<boost::edge_index_t, long unsigned int> >, graph_tool::detail::MaskFilter<boost::unchecked_vector_property_map<unsigned char, boost::adj_list_edge_property_map<boost::bidirectional_tag, long unsigned int, long unsigned int&, long unsigned int, boost::property<boost::edge_index_t, long unsigned int>, boost::edge_index_t> > >, graph_tool::detail::MaskFilter<boost::unchecked_vector_property_map<unsigned char, boost::vec_adj_list_vertex_id_map<boost::no_property, long unsigned int> > > >, const boost::filtered_graph<boost::adjacency_list<boost::vecS, boost::vecS, boost::bidirectionalS, boost::no_property, boost::property<boost::edge_index_t, long unsigned int> >, graph_tool::detail::MaskFilter<boost::unchecked_vector_property_map<unsigned char, boost::adj_list_edge_property_map<boost::bidirectional_tag, long unsigned int, long unsigned int&, long unsigned int, boost::property<boost::edge_index_t, long unsigned int>, boost::edge_index_t> > >, graph_tool::detail::MaskFilter<boost::unchecked_vector_property_map<unsigned char, boost::vec_adj_list_vertex_id_map<boost::no_property, long unsigned int> > > >&>' make[4]: *** [graph_trust_transitivity.lo] Error 1 make[4]: Leaving directory `/home/default/graph-tool/src/graph/centrality' make[3]: *** [all-recursive] Error 1 make[3]: Leaving directory `/home/default/graph-tool/src/graph' make[2]: *** [all-recursive] Error 1 make[2]: Leaving directory `/home/default/graph-tool/src' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/home/default/graph-tool' make: *** [all] Error 2 [user@localhost graph-tool]#
full make log http://pastebin.com/raw.php?i=iJCDihKs
Thank You, Justin
Hi Justin,
On 09/18/2011 06:58 AM, Justin Keogh wrote:
Hi folks, is anyone using graph-tool with Fedora 15?
Using Fedora 15 (gcc version 4.6.0 20110603) compiling the stable release or the latest git fails for me:
# uname -a Linux localhost.localdomain 2.6.40.4-5.fc15.x86_64 #1 SMP Tue Aug 30 14:38:32 UTC 2011 x86_64 x86_64 x86_64 GNU/Linux
using boost 1.46.0
./configure --with-numpy=/usr/lib64/python2.7/site-packages/numpy --with-scipy=/usr/lib64/python2.7/site-packages/scipy
make
/usr/include/boost/graph/graph_traits.hpp:222:47: error: no type named 'graph_property_type' in 'const class boost::reverse_graph<boost::filtered_graph<boost::adjacency_list<boost::vecS, boost::vecS, boost::bidirectionalS, boost::no_property, boost::property<boost::edge_index_t, long unsigned int> >, graph_tool::detail::MaskFilter<boost::unchecked_vector_property_map<unsigned char, boost::adj_list_edge_property_map<boost::bidirectional_tag, long unsigned int, long unsigned int&, long unsigned int, boost::property<boost::edge_index_t, long unsigned int>, boost::edge_index_t> > >, graph_tool::detail::MaskFilter<boost::unchecked_vector_property_map<unsigned char, boost::vec_adj_list_vertex_id_map<boost::no_property, long unsigned int> > > >, const boost::filtered_graph<boost::adjacency_list<boost::vecS, boost::vecS, boost::bidirectionalS, boost::no_property, boost::property<boost::edge_index_t, long unsigned int> >, graph_tool::detail::MaskFilter<boost::unchecked_vector_property_map<unsigned char, boost::adj_list_edge_property_map<boost::bidirectional_tag, long unsigned int, long unsigned int&, long unsigned int, boost::property<boost::edge_index_t, long unsigned int>, boost::edge_index_t> > >, graph_tool::detail::MaskFilter<boost::unchecked_vector_property_map<unsigned char, boost::vec_adj_list_vertex_id_map<boost::no_property, long unsigned int> > > >&>' make[4]: *** [graph_trust_transitivity.lo] Error 1 make[4]: Leaving directory `/home/default/graph-tool/src/graph/centrality' make[3]: *** [all-recursive] Error 1 make[3]: Leaving directory `/home/default/graph-tool/src/graph' make[2]: *** [all-recursive] Error 1 make[2]: Leaving directory `/home/default/graph-tool/src' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/home/default/graph-tool' make: *** [all] Error 2 [user@localhost graph-tool]#
full make log http://pastebin.com/raw.php?i=iJCDihKs
This is strange, since I have the same gcc and boost versions... Could you do a "make V=1", so that I can see the full compile commands?
Cheers, Tiago
yes sure,
make clean && make V=1 > graph-tool_git_make_log2.txt 2>&1
up at http://pastebin.com/raw.php?i=Y7Wn3W52
Justin
On Sun, Sep 18, 2011 at 1:23 AM, Tiago de Paula Peixoto tiago@skewed.dewrote:
Hi Justin,
On 09/18/2011 06:58 AM, Justin Keogh wrote:
Hi folks, is anyone using graph-tool with Fedora 15?
Using Fedora 15 (gcc version 4.6.0 20110603) compiling the stable release
or the latest git fails for me:
# uname -a Linux localhost.localdomain 2.6.40.4-5.fc15.x86_64 #1 SMP Tue Aug 30
14:38:32 UTC 2011 x86_64 x86_64 x86_64 GNU/Linux
using boost 1.46.0
./configure --with-numpy=/usr/lib64/python2.7/site-packages/numpy
--with-scipy=/usr/lib64/python2.7/site-packages/scipy
make
/usr/include/boost/graph/graph_traits.hpp:222:47: error: no type named
'graph_property_type' in 'const class boost::reverse_graph<boost::filtered_graph<boost::adjacency_list<boost::vecS, boost::vecS, boost::bidirectionalS, boost::no_property, boost::property<boost::edge_index_t, long unsigned int> >, graph_tool::detail::MaskFilter<boost::unchecked_vector_property_map<unsigned char, boost::adj_list_edge_property_map<boost::bidirectional_tag, long unsigned int, long unsigned int&, long unsigned int, boost::property<boost::edge_index_t, long unsigned int>, boost::edge_index_t> > >, graph_tool::detail::MaskFilter<boost::unchecked_vector_property_map<unsigned char, boost::vec_adj_list_vertex_id_map<boost::no_property, long unsigned int> > > >, const boost::filtered_graph<boost::adjacency_list<boost::vecS, boost::vecS, boost::bidirectionalS, boost::no_property, boost::property<boost::edge_index_t, long unsigned int> >,
graph_tool::detail::MaskFilter<boost::unchecked_vector_property_map<unsigned char, boost::adj_list_edge_property_map<boost::bidirectional_tag, long unsigned int, long unsigned int&, long unsigned int, boost::property<boost::edge_index_t, long unsigned int>, boost::edge_index_t> > >, graph_tool::detail::MaskFilter<boost::unchecked_vector_property_map<unsigned char, boost::vec_adj_list_vertex_id_map<boost::no_property, long unsigned int> > > >&>'
make[4]: *** [graph_trust_transitivity.lo] Error 1 make[4]: Leaving directory
`/home/default/graph-tool/src/graph/centrality'
make[3]: *** [all-recursive] Error 1 make[3]: Leaving directory `/home/default/graph-tool/src/graph' make[2]: *** [all-recursive] Error 1 make[2]: Leaving directory `/home/default/graph-tool/src' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/home/default/graph-tool' make: *** [all] Error 2 [user@localhost graph-tool]#
full make log http://pastebin.com/raw.php?i=iJCDihKs
This is strange, since I have the same gcc and boost versions... Could you do a "make V=1", so that I can see the full compile commands?
Cheers, Tiago
-- Tiago de Paula Peixoto tiago@skewed.de
graph-tool mailing list graph-tool@skewed.de http://lists.skewed.de/mailman/listinfo/graph-tool
Hi,
Sorry for the late reply...
On 09/18/2011 10:42 AM, Justin Keogh wrote:
yes sure,
make clean && make V=1 > graph-tool_git_make_log2.txt 2>&1
Strange... Are you 100% sure that you have boost 1.46 installed in /usr/include/boost, and not some other version?
I have the same version here, and I don't see the error.
Cheers, Tiago
actually it's in /usr/lib64
[default@localhost]~% ls -alh /usr/lib64/libboost* lrwxrwxrwx. 1 root root 31 Sep 17 18:30 /usr/lib64/libboost_date_time-mt.so -> libboost_date_time-mt.so.1.46.0 -rwxr-xr-x. 1 root root 67K Jun 23 15:25 /usr/lib64/libboost_date_time-mt.so.1.46.0 lrwxrwxrwx. 1 root root 28 Sep 17 18:30 /usr/lib64/libboost_date_time.so -> libboost_date_time.so.1.46.0 -rwxr-xr-x. 1 root root 66K Jun 23 15:25 /usr/lib64/libboost_date_time.so.1.46.0 lrwxrwxrwx. 1 root root 32 Sep 17 18:30 /usr/lib64/libboost_filesystem-mt.so -> libboost_filesystem-mt.so.1.46.0 -rwxr-xr-x. 1 root root 118K Jun 23 15:25 /usr/lib64/libboost_filesystem-mt.so.1.46.0 lrwxrwxrwx. 1 root root 29 Sep 17 18:30 /usr/lib64/libboost_filesystem.so -> libboost_filesystem.so.1.46.0 -rwxr-xr-x. 1 root root 118K Jun 23 15:25 /usr/lib64/libboost_filesystem.so.1.46.0 lrwxrwxrwx. 1 root root 27 Sep 17 18:30 /usr/lib64/libboost_graph-mt.so -> libboost_graph-mt.so.1.46.0 -rwxr-xr-x. 1 root root 173K Jun 23 15:25 /usr/lib64/libboost_graph-mt.so.1.46.0 lrwxrwxrwx. 1 root root 24 Sep 17 18:30 /usr/lib64/libboost_graph.so -> libboost_graph.so.1.46.0 -rwxr-xr-x. 1 root root 172K Jun 23 15:25 /usr/lib64/libboost_graph.so.1.46.0 lrwxrwxrwx. 1 root root 31 Sep 17 18:30 /usr/lib64/libboost_iostreams-mt.so -> libboost_iostreams-mt.so.1.46.0 -rwxr-xr-x. 1 root root 100K Jun 23 15:25 /usr/lib64/libboost_iostreams-mt.so.1.46.0 lrwxrwxrwx. 1 root root 28 Sep 17 18:30 /usr/lib64/libboost_iostreams.so -> libboost_iostreams.so.1.46.0 -rwxr-xr-x. 1 root root 99K Jun 23 15:25 /usr/lib64/libboost_iostreams.so.1.46.0 lrwxrwxrwx. 1 root root 38 Sep 17 18:30 /usr/lib64/libboost_prg_exec_monitor-mt.so -> libboost_prg_exec_monitor-mt.so.1.46.0 -rwxr-xr-x. 1 root root 55K Jun 23 15:25 /usr/lib64/libboost_prg_exec_monitor-mt.so.1.46.0 lrwxrwxrwx. 1 root root 35 Sep 17 18:30 /usr/lib64/libboost_prg_exec_monitor.so -> libboost_prg_exec_monitor.so.1.46.0 -rwxr-xr-x. 1 root root 55K Jun 23 15:25 /usr/lib64/libboost_prg_exec_monitor.so.1.46.0 lrwxrwxrwx. 1 root root 37 Sep 17 18:30 /usr/lib64/libboost_program_options-mt.so -> libboost_program_options-mt.so.1.46.0 -rwxr-xr-x. 1 root root 388K Jun 23 15:25 /usr/lib64/libboost_program_options-mt.so.1.46.0 lrwxrwxrwx. 1 root root 34 Sep 17 18:30 /usr/lib64/libboost_program_options.so -> libboost_program_options.so.1.46.0 -rwxr-xr-x. 1 root root 388K Jun 23 15:25 /usr/lib64/libboost_program_options.so.1.46.0 lrwxrwxrwx. 1 root root 28 Sep 17 18:30 /usr/lib64/libboost_python-mt.so -> libboost_python-mt.so.1.46.0 -rwxr-xr-x. 1 root root 304K Jun 23 15:25 /usr/lib64/libboost_python-mt.so.1.46.0 lrwxrwxrwx. 1 root root 25 Sep 17 18:30 /usr/lib64/libboost_python.so -> libboost_python.so.1.46.0 -rwxr-xr-x. 1 root root 304K Jun 23 15:25 /usr/lib64/libboost_python.so.1.46.0 lrwxrwxrwx. 1 root root 28 Sep 17 18:30 /usr/lib64/libboost_random-mt.so -> libboost_random-mt.so.1.46.0 -rwxr-xr-x. 1 root root 8.7K Jun 23 15:25 /usr/lib64/libboost_random-mt.so.1.46.0 lrwxrwxrwx. 1 root root 25 Sep 17 18:30 /usr/lib64/libboost_random.so -> libboost_random.so.1.46.0 -rwxr-xr-x. 1 root root 8.7K Jun 23 15:25 /usr/lib64/libboost_random.so.1.46.0 lrwxrwxrwx. 1 root root 27 Sep 17 18:30 /usr/lib64/libboost_regex-mt.so -> libboost_regex-mt.so.1.46.0 -rwxr-xr-x. 1 root root 1.1M Jun 23 15:25 /usr/lib64/libboost_regex-mt.so.1.46.0 lrwxrwxrwx. 1 root root 24 Sep 17 18:30 /usr/lib64/libboost_regex.so -> libboost_regex.so.1.46.0 -rwxr-xr-x. 1 root root 1.1M Jun 23 15:25 /usr/lib64/libboost_regex.so.1.46.0 lrwxrwxrwx. 1 root root 35 Sep 17 18:30 /usr/lib64/libboost_serialization-mt.so -> libboost_serialization-mt.so.1.46.0 -rwxr-xr-x. 1 root root 436K Jun 23 15:25 /usr/lib64/libboost_serialization-mt.so.1.46.0 lrwxrwxrwx. 1 root root 32 Sep 17 18:30 /usr/lib64/libboost_serialization.so -> libboost_serialization.so.1.46.0 -rwxr-xr-x. 1 root root 436K Jun 23 15:25 /usr/lib64/libboost_serialization.so.1.46.0 lrwxrwxrwx. 1 root root 29 Sep 17 18:30 /usr/lib64/libboost_signals-mt.so -> libboost_signals-mt.so.1.46.0 -rwxr-xr-x. 1 root root 85K Jun 23 15:25 /usr/lib64/libboost_signals-mt.so.1.46.0 lrwxrwxrwx. 1 root root 26 Sep 17 18:30 /usr/lib64/libboost_signals.so -> libboost_signals.so.1.46.0 -rwxr-xr-x. 1 root root 85K Jun 23 15:25 /usr/lib64/libboost_signals.so.1.46.0 lrwxrwxrwx. 1 root root 28 Sep 17 18:30 /usr/lib64/libboost_system-mt.so -> libboost_system-mt.so.1.46.0 -rwxr-xr-x. 1 root root 13K Jun 23 15:25 /usr/lib64/libboost_system-mt.so.1.46.0 lrwxrwxrwx. 1 root root 25 Sep 17 18:30 /usr/lib64/libboost_system.so -> libboost_system.so.1.46.0 -rwxr-xr-x. 1 root root 13K Jun 23 15:25 /usr/lib64/libboost_system.so.1.46.0 lrwxrwxrwx. 1 root root 28 Sep 17 18:30 /usr/lib64/libboost_thread-mt.so -> libboost_thread-mt.so.1.46.0 -rwxr-xr-x. 1 root root 98K Jun 23 15:25 /usr/lib64/libboost_thread-mt.so.1.46.0 lrwxrwxrwx. 1 root root 41 Sep 17 18:30 /usr/lib64/libboost_unit_test_framework-mt.so -> libboost_unit_test_framework-mt.so.1.46.0 -rwxr-xr-x. 1 root root 641K Jun 23 15:25 /usr/lib64/libboost_unit_test_framework-mt.so.1.46.0 lrwxrwxrwx. 1 root root 38 Sep 17 18:30 /usr/lib64/libboost_unit_test_framework.so -> libboost_unit_test_framework.so.1.46.0 -rwxr-xr-x. 1 root root 641K Jun 23 15:25 /usr/lib64/libboost_unit_test_framework.so.1.46.0 lrwxrwxrwx. 1 root root 26 Sep 17 18:30 /usr/lib64/libboost_wave-mt.so -> libboost_wave-mt.so.1.46.0 -rwxr-xr-x. 1 root root 1.3M Jun 23 15:25 /usr/lib64/libboost_wave-mt.so.1.46.0 lrwxrwxrwx. 1 root root 36 Sep 17 18:30 /usr/lib64/libboost_wserialization-mt.so -> libboost_wserialization-mt.so.1.46.0 -rwxr-xr-x. 1 root root 316K Jun 23 15:25 /usr/lib64/libboost_wserialization-mt.so.1.46.0 lrwxrwxrwx. 1 root root 33 Sep 17 18:30 /usr/lib64/libboost_wserialization.so -> libboost_wserialization.so.1.46.0 -rwxr-xr-x. 1 root root 316K Jun 23 15:25 /usr/lib64/libboost_wserialization.so.1.46.0
[default@localhost]~% yum info boost
Installed Packages Name : boost Arch : x86_64 Version : 1.46.0 Release : 3.fc15 Size : 0.0 Repo : installed
From repo : updates
Summary : The free peer-reviewed portable C++ source libraries URL : http://www.boost.org License : Boost
so I cloned a new copy of the git repo and ran:
./configure --with-boost-libdir=/usr/lib64 --with-numpy=/usr/lib64/python2.7/site-packages/numpy --with-scipy=/usr/lib64/python2.7/site-packages/scipy
but make failed with the same error.
"/usr/include/boost/graph/graph_traits.hpp:222:47: error: no type named 'graph_property_type'"
Thanks! -Justin
On Tue, Sep 20, 2011 at 6:39 AM, Tiago de Paula Peixoto tiago@skewed.dewrote:
Hi,
Sorry for the late reply...
On 09/18/2011 10:42 AM, Justin Keogh wrote:
yes sure,
make clean && make V=1 > graph-tool_git_make_log2.txt 2>&1
Strange... Are you 100% sure that you have boost 1.46 installed in /usr/include/boost, and not some other version?
I have the same version here, and I don't see the error.
Cheers, Tiago
-- Tiago de Paula Peixoto tiago@skewed.de
graph-tool mailing list graph-tool@skewed.de http://lists.skewed.de/mailman/listinfo/graph-tool
On 09/20/2011 10:06 PM, Justin Keogh wrote:
actually it's in /usr/lib64
I was actually thinking about the include files, which should lie in /usr/include. But if you have a default install of the boost package, there is no reason to suppose things are wrongly installed.
[default@localhost]~% yum info boost
Installed Packages Name : boost Arch : x86_64 Version : 1.46.0 Release : 3.fc15 Size : 0.0 Repo : installed From repo : updates Summary : The free peer-reviewed portable C++ source libraries URL : http://www.boost.org License : Boost
so I cloned a new copy of the git repo and ran:
./configure --with-boost-libdir=/usr/lib64 --with-numpy=/usr/lib64/python2.7/site-packages/numpy --with-scipy=/usr/lib64/python2.7/site-packages/scipy
but make failed with the same error.
"/usr/include/boost/graph/graph_traits.hpp:222:47: error: no type named 'graph_property_type'"
I have currently no explanation for this... Could you please send me the following files from your system:
/usr/include/boost/graph/filtered_graph.hpp /usr/include/boost/graph/reverse_graph.hpp
Thanks, Tiago
Ok, They are attached.
Much appreciated!
-Justin
On Fri, Sep 23, 2011 at 12:49 PM, Tiago de Paula Peixoto tiago@skewed.dewrote:
On 09/20/2011 10:06 PM, Justin Keogh wrote:
actually it's in /usr/lib64
I was actually thinking about the include files, which should lie in /usr/include. But if you have a default install of the boost package, there is no reason to suppose things are wrongly installed.
[default@localhost]~% yum info boost
Installed Packages Name : boost Arch : x86_64 Version : 1.46.0 Release : 3.fc15 Size : 0.0 Repo : installed From repo : updates Summary : The free peer-reviewed portable C++ source libraries URL : http://www.boost.org License : Boost
so I cloned a new copy of the git repo and ran:
./configure --with-boost-libdir=/usr/lib64
--with-numpy=/usr/lib64/python2.7/site-packages/numpy --with-scipy=/usr/lib64/python2.7/site-packages/scipy
but make failed with the same error.
"/usr/include/boost/graph/graph_traits.hpp:222:47: error: no type named
'graph_property_type'"
I have currently no explanation for this... Could you please send me the following files from your system:
/usr/include/boost/graph/filtered_graph.hpp /usr/include/boost/graph/reverse_graph.hpp
Thanks, Tiago
-- Tiago de Paula Peixoto tiago@skewed.de
graph-tool mailing list graph-tool@skewed.de http://lists.skewed.de/mailman/listinfo/graph-tool
-
Justin Keogh -
Tiago de Paula Peixoto