Can't compile graph-tool on Solus, not enough RAM
I have a laptop with 8GB RAM and 6GB swap yet when I try to make graph-tool it always runs out of RAM while compiling graph_blockmodel.hh:236:2 If I try with GCC it gives usually is killed but sometimes restarts the computer, if I try with clang it restarts the computer. I'm using Solus as my distro. -- View this message in context: http://main-discussion-list-for-the-graph-tool-project.982480.n3.nabble.com/... Sent from the Main discussion list for the graph-tool project mailing list archive at Nabble.com.
Ni! Hi Padraig, Some things which might help us help you: a) gcc version you're using b) graph-tool version you're compiling c) how much ram do you actually have available when you start your compilation d) the actual error message coming out of gcc cheers, ale .~´ On Wed, Jun 28, 2017 at 12:34 PM, padraigmac <padraig_mac@hotmail.com> wrote:
I have a laptop with 8GB RAM and 6GB swap yet when I try to make graph-tool it always runs out of RAM while compiling graph_blockmodel.hh:236:2 If I try with GCC it gives usually is killed but sometimes restarts the computer, if I try with clang it restarts the computer.
I'm using Solus as my distro.
-- View this message in context: http://main-discussion-list- for-the-graph-tool-project.982480.n3.nabble.com/Can-t- compile-graph-tool-on-Solus-not-enough-RAM-tp4027271.html Sent from the Main discussion list for the graph-tool project mailing list archive at Nabble.com. _______________________________________________ graph-tool mailing list graph-tool@skewed.de https://lists.skewed.de/mailman/listinfo/graph-tool
Hi Ale, I did mean to provide the error message but the last time I tried to run it it restarted the computer so I couldn't get it but I got it again there, it got a little further this time: graph_blockmodel.hh:236:28: note: here case weight_type::REAL_EXPONENTIAL: ^~~~ {standard input}: Assembler messages: {standard input}:625641: Warning: end of file not at end of a line; newline inserted {standard input}:626860: Error: expected comma after name `_ZZZ11export_lsbmvENKUlPT_E_clIN10graph_tool10BlockStateIJN5boost18undirected_adaptorINS5_8adj_listImEEEENS5_29unchecked_vector_property_mapISt6vectorISt5tupleIJmmmEESaISD_EENS5_27typed_identity_property_mapImEEEESt17integral_constantIbLb0EESJ_IbLb1EENS5_3anyESM_SM_NSA_IiNS5_27adj_edge_index_property_mapImEEEENSA_I' in .size directive g++: internal compiler error: Killed (program cc1plus) Please submit a full bug report, with preprocessed source if appropriate. I'm using gcc version 7.10 trying to compile graph-tool version 2.22/ When I started the compilation I had 7.0G available according to free -h. However the while the swap was free it doesn't say anything under available there if that's a problem. Swap is on and I can hibernate. Thanks, Pádraig Alexandre Hannud Abdo wrote
Ni! Hi Padraig,
Some things which might help us help you:
a) gcc version you're using b) graph-tool version you're compiling c) how much ram do you actually have available when you start your compilation d) the actual error message coming out of gcc
cheers,
ale .~´
On Wed, Jun 28, 2017 at 12:34 PM, padraigmac <
padraig_mac@
> wrote:
I have a laptop with 8GB RAM and 6GB swap yet when I try to make graph-tool it always runs out of RAM while compiling graph_blockmodel.hh:236:2 If I try with GCC it gives usually is killed but sometimes restarts the computer, if I try with clang it restarts the computer.
I'm using Solus as my distro.
-- View this message in context: http://main-discussion-list- for-the-graph-tool-project.982480.n3.nabble.com/Can-t- compile-graph-tool-on-Solus-not-enough-RAM-tp4027271.html Sent from the Main discussion list for the graph-tool project mailing list archive at Nabble.com. _______________________________________________ graph-tool mailing list
graph-tool@
_______________________________________________ graph-tool mailing list
graph-tool@
-- View this message in context: http://main-discussion-list-for-the-graph-tool-project.982480.n3.nabble.com/... Sent from the Main discussion list for the graph-tool project mailing list archive at Nabble.com.
On 28.06.2017 14:28, padraigmac wrote:
Hi Ale,
I did mean to provide the error message but the last time I tried to run it it restarted the computer so I couldn't get it but I got it again there, it got a little further this time:
graph_blockmodel.hh:236:28: note: here case weight_type::REAL_EXPONENTIAL: ^~~~ {standard input}: Assembler messages: {standard input}:625641: Warning: end of file not at end of a line; newline inserted {standard input}:626860: Error: expected comma after name `_ZZZ11export_lsbmvENKUlPT_E_clIN10graph_tool10BlockStateIJN5boost18undirected_adaptorINS5_8adj_listImEEEENS5_29unchecked_vector_property_mapISt6vectorISt5tupleIJmmmEESaISD_EENS5_27typed_identity_property_mapImEEEESt17integral_constantIbLb0EESJ_IbLb1EENS5_3anyESM_SM_NSA_IiNS5_27adj_edge_index_property_mapImEEEENSA_I' in .size directive g++: internal compiler error: Killed (program cc1plus) Please submit a full bug report, with preprocessed source if appropriate.
I'm using gcc version 7.10 trying to compile graph-tool version 2.22/
When I started the compilation I had 7.0G available according to free -h. However the while the swap was free it doesn't say anything under available there if that's a problem. Swap is on and I can hibernate.
I recommend you try the current git version, which should require less memory for that part to compile. Best, Tiago -- Tiago de Paula Peixoto <tiago@skewed.de>
Got further using the current git version but still couldn't compile it: CXX graph_similarity.lo {standard input}: Assembler messages: {standard input}:17833566: Warning: end of file not at end of a line; newline inserted {standard input}:17833641: Error: unknown pseudo-op: `.' {standard input}: Error: open CFI at the end of file; missing .cfi_endproc directive g++: internal compiler error: Killed (program cc1plus) Please submit a full bug report, with preprocessed source if appropriate. -- View this message in context: http://main-discussion-list-for-the-graph-tool-project.982480.n3.nabble.com/... Sent from the Main discussion list for the graph-tool project mailing list archive at Nabble.com.
Just to update, I increased the Swap and it compiled okay. Took 15GB at it's peak, at one point I had 330MB memory free! -- View this message in context: http://main-discussion-list-for-the-graph-tool-project.982480.n3.nabble.com/... Sent from the Main discussion list for the graph-tool project mailing list archive at Nabble.com.
On 30.06.2017 11:03, padraigmac wrote:
Just to update, I increased the Swap and it compiled okay. Took 15GB at it's peak, at one point I had 330MB memory free!
This is very strange; I never observed anything close to this. Are you sure you are not compiling in parallel? -- Tiago de Paula Peixoto <tiago@skewed.de>
Sorry for the incredibly slow response, I took a screen grab of top while it was compiling at one stage, see here <http://http://imgur.com/a/gBbki> . It didn't seem to compile in parallel no. -- View this message in context: http://main-discussion-list-for-the-graph-tool-project.982480.n3.nabble.com/... Sent from the Main discussion list for the graph-tool project mailing list archive at Nabble.com.
On 19.07.2017 11:00, padraigmac wrote:
Sorry for the incredibly slow response, I took a screen grab of top while it was compiling at one stage, see here <http://http://imgur.com/a/gBbki> . It didn't seem to compile in parallel no.
It's using 7 gigs in this case, not 15. I noticed you were using graph-tool 2.22. You should try the git version, which has been modified to use less memory during compilation. -- Tiago de Paula Peixoto <tiago@skewed.de>
That must have been when I tried it first before turning swap on then, I thought I took other ones but I guess not. I did compile the master version in the end after you suggested it above but I didn't take any screen grabs that time. What I'll do is try and compile it again later and if I get any memory spikes I'll screenshot it and post it here. -- View this message in context: http://main-discussion-list-for-the-graph-tool-project.982480.n3.nabble.com/... Sent from the Main discussion list for the graph-tool project mailing list archive at Nabble.com.
It ran out of memory the first time it got to graph_similarity.lo but the second time it finished it barely, here is a screen shot <http://imgur.com/86FKunK> , it got to 7.9G in swap (+7.3G in Mem) and then went on to the next one. -- View this message in context: http://main-discussion-list-for-the-graph-tool-project.982480.n3.nabble.com/... Sent from the Main discussion list for the graph-tool project mailing list archive at Nabble.com.
participants (3)
-
Alexandre Hannud Abdo -
padraigmac -
Tiago de Paula Peixoto