Hi, I am trying to install graph-tool on a SGI system. uname -a : Linux 2.6.16.60-0.69.1-default #1 SMP Fri Sep 17 17:07:54 UTC 2010 ia64 ia64 ia64 GNU/Linux
Command line used : /home/arcadm/SGI/Software/graph-tool/graph-tool-2.2.9/configure --with-boost=/apps/packages/boost_1_45_0 --with-boost-libdir=/apps/packages/boost_1_45_0/lib --with-boost-python=/apps/packages/boost_1_45_0/lib/libboost_python.so --prefix=/apps/packages/graph-tool
ENVIORNMENT VARIABLES: LDFLAGS=-L/apps/packages/boost_1_45_0/lib -L/apps/packages/cgal-3.6.1/lib
CPPFLAGS=-I/apps/packages/boost_1_45_0/include -I/apps/packages/cgal-3.6.1/include -I/apps/packages/Python-2.6.6/include/python2.6
LD_LIBRARY_PATH=/apps/packages/cgal-3.6.1/lib:/apps/packages/RS:/apps/packages/taucs:/apps/packages/metis-4.0:/apps/packages/atlas-3.9.32/lib:/apps/packages/boost_1_45_0/lib:/apps/packages/gcc-4.4.4/lib:/apps/packages/mpfr-3.0.0/lib:/apps/packages/gmp-5.0.1/lib:/apps/packages/Python-2.6.6/lib
I have made sure all the dependent libraries for graph-tool are taken care by the LD_LIBRARY_PATH.
ERROR MESSAGE: checking for python2.6/Python.h... (cached) no results of the Python check: Binary: python2.6 Library: python2.6 Include Dir: no checking whether the Boost::Python library is available... no configure: error: No usable boost::python found
config.log error message: configure:17155: checking for python2.6/Python.h configure:17155: result: no configure:17180: result: results of the Python check: configure:17182: result: Binary: python2.6 configure:17184: result: Library: python2.6 configure:17186: result: Include Dir: no configure:17198: checking whether the Boost::Python library is available configure:17228: g++ -c -Wall -ftemplate-depth-150 -Wno-deprecated -O99 -fvisibility=default -fvisibility-inlines-hidden -Wno-unknown-pragmas -I/apps/packages/Python-2.6.6/include/python2.6 conftest.cpp >&5 conftest.cpp:35:36: error: boost/python/module.hpp: No such file or directory conftest.cpp:36: error: 'boost' has not been declared conftest.cpp:36: error: 'python' is not a namespace-name conftest.cpp:36: error: expected namespace-name before ';' token conftest.cpp:37: error: expected constructor, destructor, or type conversion before '(' token configure:17228: $? = 1
I have attached config.log for your reference.
python.h is installed in Python2.6/include/python2.6 and not Python2.6. I am not sure why it is searching for python.h in Python2.6. I can create a soft link inside Python2.6 to the actual file in Python2.6/include/python2.6 but I am not sure if that is the right way to go about it.
Could you please help me out on this issue.
Hi,
On 01/06/2011 10:23 PM, shankha wrote:
Hi, I am trying to install graph-tool on a SGI system. uname -a : Linux 2.6.16.60-0.69.1-default #1 SMP Fri Sep 17 17:07:54 UTC 2010 ia64 ia64 ia64 GNU/Linux
Command line used : /home/arcadm/SGI/Software/graph-tool/graph-tool-2.2.9/configure --with-boost=/apps/packages/boost_1_45_0 --with-boost-libdir=/apps/packages/boost_1_45_0/lib --with-boost-python=/apps/packages/boost_1_45_0/lib/libboost_python.so --prefix=/apps/packages/graph-tool
ENVIORNMENT VARIABLES: LDFLAGS=-L/apps/packages/boost_1_45_0/lib -L/apps/packages/cgal-3.6.1/lib
CPPFLAGS=-I/apps/packages/boost_1_45_0/include -I/apps/packages/cgal-3.6.1/include -I/apps/packages/Python-2.6.6/include/python2.6
LD_LIBRARY_PATH=/apps/packages/cgal-3.6.1/lib:/apps/packages/RS:/apps/packages/taucs:/apps/packages/metis-4.0:/apps/packages/atlas-3.9.32/lib:/apps/packages/boost_1_45_0/lib:/apps/packages/gcc-4.4.4/lib:/apps/packages/mpfr-3.0.0/lib:/apps/packages/gmp-5.0.1/lib:/apps/packages/Python-2.6.6/lib
I have made sure all the dependent libraries for graph-tool are taken care by the LD_LIBRARY_PATH.
ERROR MESSAGE: checking for python2.6/Python.h... (cached) no results of the Python check: Binary: python2.6 Library: python2.6 Include Dir: no checking whether the Boost::Python library is available... no configure: error: No usable boost::python found
It seems that your include flags are not being used. If we look in the config.log, we see that the compile command is:
g++ -c -Wall -ftemplate-depth-150 -Wno-deprecated -O99 -fvisibility=default -fvisibility-inlines-hidden -Wno-unknown-pragmas -I/apps/packages/Python-2.6.6/include/python2.6 conftest.cpp >&5
Which doesn't have any of your include paths. This is because you defined them in "CPPFLAGS" which is for the C _preprocessor_ not for the C++ compiler. You should use CXXFLAGS instead.
Cheers, Tiago
Hi Tiago, Thanks for your help. Setting up of CXXFLAGS did help. The configure script still can't figure out the Python.h file's location.
LOG MESSAGE : checking for python2.6/Python.h... (cached) no results of the Python check: Binary: python2.6 Library: python2.6 Include Dir: no
I am attaching the config.log for your reference. http://main-discussion-list-for-the-graph-tool-project.982480.n3.nabble.com/... config.log
Hi,
On 01/06/2011 10:23 PM, shankha wrote:
Hi, I am trying to install graph-tool on a SGI system. uname -a : Linux 2.6.16.60-0.69.1-default #1 SMP Fri Sep 17 17:07:54 UTC 2010 ia64 ia64 ia64 GNU/Linux
Command line used : /home/arcadm/SGI/Software/graph-tool/graph-tool-2.2.9/configure --with-boost=/apps/packages/boost_1_45_0 --with-boost-libdir=/apps/packages/boost_1_45_0/lib --with-boost-python=/apps/packages/boost_1_45_0/lib/libboost_python.so --prefix=/apps/packages/graph-tool
ENVIORNMENT VARIABLES: LDFLAGS=-L/apps/packages/boost_1_45_0/lib -L/apps/packages/cgal-3.6.1/lib
CPPFLAGS=-I/apps/packages/boost_1_45_0/include -I/apps/packages/cgal-3.6.1/include -I/apps/packages/Python-2.6.6/include/python2.6
LD_LIBRARY_PATH=/apps/packages/cgal-3.6.1/lib:/apps/packages/RS:/apps/packages/taucs:/apps/packages/metis-4.0:/apps/packages/atlas-3.9.32/lib:/apps/packages/boost_1_45_0/lib:/apps/packages/gcc-4.4.4/lib:/apps/packages/mpfr-3.0.0/lib:/apps/packages/gmp-5.0.1/lib:/apps/packages/Python-2.6.6/lib
I have made sure all the dependent libraries for graph-tool are taken care by the LD_LIBRARY_PATH.
ERROR MESSAGE: checking for python2.6/Python.h... (cached) no results of the Python check: Binary: python2.6 Library: python2.6 Include Dir: no checking whether the Boost::Python library is available... no configure: error: No usable boost::python found
It seems that your include flags are not being used. If we look in the config.log, we see that the compile command is:
g++ -c -Wall -ftemplate-depth-150 -Wno-deprecated -O99 -fvisibility=default -fvisibility-inlines-hidden -Wno-unknown-pragmas -I/apps/packages/Python-2.6.6/include/python2.6 conftest.cpp >&5
Which doesn't have any of your include paths. This is because you defined them in "CPPFLAGS" which is for the C _preprocessor_ not for the C++ compiler. You should use CXXFLAGS instead.
Thanks Shankha
Hi Tiago, Thanks for your help. Setting up of CXXFLAGS did help. The configure script still can't figure out the Python.h file's location.
LOG MESSAGE : checking for python2.6/Python.h... (cached) no results of the Python check: Binary: python2.6 Library: python2.6 Include Dir: no
I am attaching the config.log for your reference.
Thanks
Hi, The configure did went fine except one issue which I have mentioned in my previous post. make didn't go through.
ERROR MESSAGE: /apps/packages/cgal-3.6.1/include/CGAL/Gmpq.h: In member function 'std::pair<double, double> CGAL::Real_embeddable_traitsCGAL::Gmpq::To_interval::operator()(const CGAL::Gmpq&) const': /apps/packages/cgal-3.6.1/include/CGAL/Gmpq.h:91: error: 'mpfr_t' was not declared in this scope /apps/packages/cgal-3.6.1/include/CGAL/Gmpq.h:91: error: expected ';' before 'y' /apps/packages/cgal-3.6.1/include/CGAL/Gmpq.h:92: error: 'y' was not declared in this scope /apps/packages/cgal-3.6.1/include/CGAL/Gmpq.h:92: error: 'mpfr_init2' was not declared in this scope /apps/packages/cgal-3.6.1/include/CGAL/Gmpq.h:93: error: 'GMP_RNDD' was not declared in this scope /apps/packages/cgal-3.6.1/include/CGAL/Gmpq.h:93: error: 'mpfr_set_q' was not declared in this scope /apps/packages/cgal-3.6.1/include/CGAL/Gmpq.h:94: error: 'mpfr_get_d' was not declared in this scope /apps/packages/cgal-3.6.1/include/CGAL/Gmpq.h:95: error: 'GMP_RNDU' was not declared in this scope /apps/packages/cgal-3.6.1/include/CGAL/Gmpq.h:97: error: 'mpfr_clear' was not declared in this scope make[4]: *** [graph_triangulation.lo] Error 1 make[4]: Leaving directory `/home/arcadm/SGI/Software/graph-tool/build/src/graph/generation' make[3]: *** [all-recursive] Error 1 make[3]: Leaving directory `/home/arcadm/SGI/Software/graph-tool/build/src/graph' make[2]: *** [all-recursive] Error 1 make[2]: Leaving directory `/home/arcadm/SGI/Software/graph-tool/build/src' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/home/arcadm/SGI/Software/graph-tool/build'
I have attached the LOG file for your reference.
Thanks Shankha http://main-discussion-list-for-the-graph-tool-project.982480.n3.nabble.com/... LOG_MAKE
On 01/07/2011 01:06 PM, shankha wrote:
Hi, The configure did went fine except one issue which I have mentioned in my previous post. make didn't go through.
ERROR MESSAGE: /apps/packages/cgal-3.6.1/include/CGAL/Gmpq.h: In member function 'std::pair<double, double> CGAL::Real_embeddable_traitsCGAL::Gmpq::To_interval::operator()(const CGAL::Gmpq&) const': /apps/packages/cgal-3.6.1/include/CGAL/Gmpq.h:91: error: 'mpfr_t' was not declared in this scope
This seems like a problem with the CGAL installation (mprf_t belongs to the the GNU MPRF library http://www.mpfr.org/, which you should have). Are you sure CGAL is installed properly?
Cheers, Tiago
Hi, I fixed the path issues and configure went on fine. The build is going on forever(5 hrs). Usually how much time it takes to build graph tool.
On Fri, Jan 7, 2011 at 7:14 AM, Tiago Peixoto [via Main discussion list for the graph-tool project] <ml-node+2211421-652962428-312846@n3.nabble.comml-node%2B2211421-652962428-312846@n3.nabble.com
wrote:
On 01/07/2011 01:06 PM, shankha wrote:
Hi, The configure did went fine except one issue which I have mentioned in my
previous post. make didn't go through.
ERROR MESSAGE: /apps/packages/cgal-3.6.1/include/CGAL/Gmpq.h: In member function 'std::pair<double, double> CGAL::Real_embeddable_traitsCGAL::Gmpq::To_interval::operator()(const CGAL::Gmpq&) const': /apps/packages/cgal-3.6.1/include/CGAL/Gmpq.h:91: error: 'mpfr_t' was not
declared in this scope
This seems like a problem with the CGAL installation (mprf_t belongs to the the GNU MPRF library http://www.mpfr.org/, which you should have). Are you sure CGAL is installed properly?
Cheers, Tiago
-- Tiago de Paula Peixoto <[hidden email]http://user/SendEmail.jtp?type=node&node=2211421&i=0>
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On 01/07/2011 10:47 PM, shankha wrote:
Hi, I fixed the path issues and configure went on fine. The build is going on forever(5 hrs). Usually how much time it takes to build graph tool.
On my laptop, a full compile takes about an hour or two... But this depends of course on how fast the machine is.
Cheers, Tiago
-- Tiago de Paula Peixoto tiago@skewed.de
On 01/07/2011 12:58 PM, shankha wrote:
Hi Tiago, Thanks for your help. Setting up of CXXFLAGS did help. The configure script still can't figure out the Python.h file's location.
LOG MESSAGE : checking for python2.6/Python.h... (cached) no results of the Python check: Binary: python2.6 Library: python2.6 Include Dir: no
I am attaching the config.log for your reference.
The only errors I'm seeing in the log are that the include files for Python and CGAL are not being found. Are you sure the include paths you provided are correct?
Cheers, Tiago -- Tiago de Paula Peixoto tiago@skewed.de
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shankha -
Tiago de Paula Peixoto