ImportError: no module named graph_tool.all
Hello, I am new to graph-tool. So, I installed it on Mac OS X using the command sudo port install py-graph-tool. Installation was complete and I went on to run my python code. This is what I got: Traceback (most recent call last): File "SIR.py", line 1, in <module> from graph_tool.all import * ImportError: No module named graph_tool.all The piece of code that created this so called error: from graph_tool.all import * from random import * import smallworld I figured that after installing py-graph-tool, it should work. What I already tried is adding this line to .profile: export PYTHONPATH=/usr/local/lib/python2.7/site-packages/ However, no success. Please, help me out here. Regards -- View this message in context: http://main-discussion-list-for-the-graph-tool-project.982480.n3.nabble.com/... Sent from the Main discussion list for the graph-tool project mailing list archive at Nabble.com.
I tried installing py-graph-tool again. This is what I after running, sudo port install py-graph-tool, again: ---> Computing dependencies for py-graph-tool ---> Cleaning py-graph-tool ---> Scanning binaries for linking errors: 100.0% ---> No broken files found. -- View this message in context: http://main-discussion-list-for-the-graph-tool-project.982480.n3.nabble.com/... Sent from the Main discussion list for the graph-tool project mailing list archive at Nabble.com.
On 12/11/2013 01:46 AM, Rampo wrote:
Hello,
I am new to graph-tool. So, I installed it on Mac OS X using the command sudo port install py-graph-tool. Installation was complete and I went on to run my python code.
This is what I got:
Traceback (most recent call last): File "SIR.py", line 1, in <module> from graph_tool.all import * ImportError: No module named graph_tool.all
It seems that you are not invoking the version of python which belongs to macports, but rather the system's version, which does not know anything about the modules installed by macports. Make sure to call the correct python interpreter, which probably is something like: /usr/local/bin/python2.7 Cheers, Tiago -- Tiago de Paula Peixoto <tiago@skewed.de>
So, I figured in order to call the Macports python version you have to use: /opt/local/bin/python2.7 However I get this error now using /opt/local/bin/python2.7 SIR.py: Fatal Python error: PyThreadState_Get: no current thread Abort trap: 6 -- View this message in context: http://main-discussion-list-for-the-graph-tool-project.982480.n3.nabble.com/... Sent from the Main discussion list for the graph-tool project mailing list archive at Nabble.com.
Some additional info from the report: Crashed Thread: 0 Dispatch queue: com.apple.main-thread Exception Type: EXC_CRASH (SIGABRT) Exception Codes: 0x0000000000000000, 0x0000000000000000 Application Specific Information: abort() called Thread 0 Crashed:: Dispatch queue: com.apple.main-thread 0 libsystem_kernel.dylib 0x00007fff8f5fc866 __pthread_kill + 10 1 libsystem_pthread.dylib 0x00007fff8c16035c pthread_kill + 92 2 libsystem_c.dylib 0x00007fff8c4f9bba abort + 125 3 org.python.python 0x0000000114247ec1 Py_FatalError + 49 4 org.python.python 0x0000000114247411 PyThreadState_Get + 28 5 org.python.python 0x0000000114244476 Py_InitModule4_64 + 58 6 libboost_python.dylib 0x0000000113fb1ef8 boost::python::detail::init_module(char const*, void (*)()) + 40 7 org.python.python 0x000000010d5add86 _PyImport_LoadDynamicModule + 150 8 org.python.python 0x000000010d5ada87 import_submodule + 279 9 org.python.python 0x000000010d5ad854 ensure_fromlist + 532 10 org.python.python 0x000000010d5ab573 PyImport_ImportModuleLevel + 1347 11 org.python.python 0x000000010d58b304 builtin___import__ + 132 12 org.python.python 0x000000010d4ff665 PyObject_Call + 101 13 org.python.python 0x000000010d593763 PyEval_EvalFrameEx + 13683 14 org.python.python 0x000000010d590076 PyEval_EvalCodeEx + 1734 15 org.python.python 0x000000010d58f9a6 PyEval_EvalCode + 54 16 org.python.python 0x000000010d5b775d PyRun_StringFlags + 125 17 org.python.python 0x000000010d594985 PyEval_EvalFrameEx + 18325 18 org.python.python 0x000000010d590076 PyEval_EvalCodeEx + 1734 19 org.python.python 0x000000010d596f36 fast_function + 294 20 org.python.python 0x000000010d59328b PyEval_EvalFrameEx + 12443 21 org.python.python 0x000000010d590076 PyEval_EvalCodeEx + 1734 22 org.python.python 0x000000010d58f9a6 PyEval_EvalCode + 54 23 org.python.python 0x000000010d5a9f57 PyImport_ExecCodeModuleEx + 247 24 org.python.python 0x000000010d5ace77 load_source_module + 935 25 org.python.python 0x000000010d5ad16a load_package + 298 26 org.python.python 0x000000010d5ada87 import_submodule + 279 27 org.python.python 0x000000010d5ad51f load_next + 271 28 org.python.python 0x000000010d5ab4b1 PyImport_ImportModuleLevel + 1153 29 org.python.python 0x000000010d58b304 builtin___import__ + 132 30 org.python.python 0x000000010d4ff665 PyObject_Call + 101 31 org.python.python 0x000000010d593763 PyEval_EvalFrameEx + 13683 32 org.python.python 0x000000010d590076 PyEval_EvalCodeEx + 1734 33 org.python.python 0x000000010d58f9a6 PyEval_EvalCode + 54 34 org.python.python 0x000000010d5b7611 PyRun_FileExFlags + 161 35 org.python.python 0x000000010d5b715e PyRun_SimpleFileExFlags + 718 36 org.python.python 0x000000010d5cb002 Py_Main + 3314 37 libdyld.dylib 0x00007fff967335fd start + 1 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x00007fff79527310 rcx: 0x00007fff52711708 rdx: 0x0000000000000000 rdi: 0x0000000000000d07 rsi: 0x0000000000000006 rbp: 0x00007fff52711730 rsp: 0x00007fff52711708 r8: 0x0000000000000040 r9: 0x00007fff52711700 r10: 0x0000000008000000 r11: 0x0000000000000206 r12: 0x0000000000000000 r13: 0x000000010f44ba60 r14: 0x0000000000000006 r15: 0x00000000000003f5 rip: 0x00007fff8f5fc866 rfl: 0x0000000000000206 cr2: 0x0000000114280d5c Logical CPU: 0 Error Code: 0x02000148 Trap Number: 133 Binary Images: 0x10d4ed000 - 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On 12/11/2013 10:02 AM, Rampo wrote:
So, I figured in order to call the Macports python version you have to use:
/opt/local/bin/python2.7
However I get this error now using /opt/local/bin/python2.7 SIR.py:
Fatal Python error: PyThreadState_Get: no current thread Abort trap: 6
This looks like a library linking incompatibility issue. Please submit a bug report to the macports project at: http://trac.macports.org/wiki/Tickets They should be able to help you with this. Cheers, Tiago -- Tiago de Paula Peixoto <tiago@skewed.de>
participants (2)
-
Rampo -
Tiago de Paula Peixoto