[graph-tool] Inference - Aborted (core dumped)

Hello Tiago, I have been running a piece of code to give me some idea how long it takes me to calculate edge likelihoods as I add vertices and edges to my network. This works for a while and then it all crashes with a rather nasty looking error message. The code is very similar to what I have posted here <http://main-discussion-list-for-the-graph-tool-project.982480.n3.nabble.com/Questions-about-output-of-quot-history-quot-of-graph-tool-inference-mcmc-equilibrate-td4027027.html#a4027051> so I won't paste it here again in the interest of brevity, though the entire script can be found here ( edge_prediction_stats.py <http://main-discussion-list-for-the-graph-tool-project.982480.n3.nabble.com/file/n4027054/edge_prediction_stats.py> ). When my script gets to a certain point in the loop it crashes with a long error message. (I have observed this when the code reaches the filtered network corresponding to pub_year=1870 and pub_year=1880). I presume this appears to happen when evaluating `state = gt.minimize_nested_blockmodel_dl(g, deg_corr=True)` as far as I can tell by the screen output. The error message that I then get is posted below. Is this caused by an issue in graph-tool? I am running Ubuntu 16.04, running gcc -v returns gcc version 4.8.5 (GCC) though GCC 5.4.0-6ubuntu1~16.04.4 is also installed and my graph-tool version is 2.20dev (commit 01432d60, Sun Jan 15 19:54:52 2017 +0000). *** Error in `python': double free or corruption (out): 0x00000000033db2c0 *** ======= Backtrace: ========= /lib/x86_64-linux-gnu/libc.so.6(+0x777e5)[0x7ff250de37e5] /lib/x86_64-linux-gnu/libc.so.6(+0x7fe0a)[0x7ff250debe0a] /lib/x86_64-linux-gnu/libc.so.6(cfree+0x4c)[0x7ff250def98c] /home/pmj27/anaconda/lib/python2.7/site-packages/graph_tool/libgraph_tool_core.so(+0x1bf83b1)[0x7ff2405333b1] /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0(+0x2547c)[0x7ff23e4eb47c] /home/pmj27/anaconda/bin/../lib/libpython2.7.so.1.0(+0xae435)[0x7ff251b10435] /home/pmj27/anaconda/bin/../lib/libpython2.7.so.1.0(+0x8ecab)[0x7ff251af0cab] /home/pmj27/anaconda/bin/../lib/libpython2.7.so.1.0(+0xae4f1)[0x7ff251b104f1] /home/pmj27/anaconda/bin/../lib/libpython2.7.so.1.0(+0x8ecab)[0x7ff251af0cab] /home/pmj27/anaconda/bin/../lib/libpython2.7.so.1.0(+0xae4f1)[0x7ff251b104f1] /home/pmj27/anaconda/bin/../lib/libpython2.7.so.1.0(+0x7f08f)[0x7ff251ae108f] /home/pmj27/anaconda/bin/../lib/libpython2.7.so.1.0(+0x8ecab)[0x7ff251af0cab] /home/pmj27/anaconda/bin/../lib/libpython2.7.so.1.0(+0xae4f1)[0x7ff251b104f1] /home/pmj27/anaconda/bin/../lib/libpython2.7.so.1.0(+0x8cbe7)[0x7ff251aeebe7] /home/pmj27/anaconda/bin/../lib/libpython2.7.so.1.0(PyDict_SetItem+0x8c)[0x7ff251af203c] /home/pmj27/anaconda/bin/../lib/libpython2.7.so.1.0(PyEval_EvalFrameEx+0x6ae0)[0x7ff251b5d010] /home/pmj27/anaconda/bin/../lib/libpython2.7.so.1.0(PyEval_EvalCodeEx+0x89e)[0x7ff251b5fa2e] /home/pmj27/anaconda/bin/../lib/libpython2.7.so.1.0(PyEval_EvalCode+0x32)[0x7ff251b5fb42] /home/pmj27/anaconda/bin/../lib/libpython2.7.so.1.0(PyRun_FileExFlags+0xb0)[0x7ff251b80050] /home/pmj27/anaconda/bin/../lib/libpython2.7.so.1.0(PyRun_SimpleFileExFlags+0xef)[0x7ff251b8022f] /home/pmj27/anaconda/bin/../lib/libpython2.7.so.1.0(Py_Main+0xca4)[0x7ff251b95b74] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf0)[0x7ff250d8c830] python[0x400649] ======= Memory map: ======== 00400000-00401000 r-xp 00000000 08:11 87037196 /home/pmj27/anaconda/bin/python2.7 00600000-00601000 rw-p 00000000 08:11 87037196 /home/pmj27/anaconda/bin/python2.7 00f8f000-3110f000 rw-p 00000000 00:00 0 [heap] 7ff174000000-7ff174021000 rw-p 00000000 00:00 0 7ff174021000-7ff178000000 ---p 00000000 00:00 0 7ff17bbe7000-7ff184000000 rw-p 00000000 00:00 0 7ff184000000-7ff184021000 rw-p 00000000 00:00 0 7ff184021000-7ff188000000 ---p 00000000 00:00 0 7ff188000000-7ff188021000 rw-p 00000000 00:00 0 7ff188021000-7ff18c000000 ---p 00000000 00:00 0 7ff18c000000-7ff18c021000 rw-p 00000000 00:00 0 7ff18c021000-7ff190000000 ---p 00000000 00:00 0 7ff190000000-7ff190021000 rw-p 00000000 00:00 0 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/home/pmj27/anaconda/lib/python2.7/site-packages/graph_tool/stats/libgraph_tool_stats.so 7ff234f7f000-7ff2388d3000 r-xp 00000000 08:11 115086288 /home/pmj27/anaconda/lib/python2.7/site-packages/graph_tool/topology/libgraph_tool_topology.so 7ff2388d3000-7ff238ad2000 ---p 03954000 08:11 115086288 /home/pmj27/anaconda/lib/python2.7/site-packages/graph_tool/topology/libgraph_tool_topology.so 7ff238ad2000-7ff238ada000 r--p 03953000 08:11 115086288 /home/pmj27/anaconda/lib/python2.7/site-packages/graph_tool/topology/libgraph_tool_topology.so 7ff238ada000-7ff238b05000 rw-p 0395b000 08:11 115086288 /home/pmj27/anaconda/lib/python2.7/site-packages/graph_tool/topology/libgraph_tool_topology.so 7ff238b05000-7ff238b06000 rw-p 00000000 00:00 0 Aborted (core dumped) -- View this message in context: http://main-discussion-list-for-the-graph-tool-project.982480.n3.nabble.com/... 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