Thanks for this. Sorted..!
However, I am still struggling to understand how to call and make use of the hierarchical vertexes and edges after running the nSBM.
I can then pull the levels and calculate their centrality with:
l1state = state.levels.g
ee1, x1 = gt.eigenvector(l1state)
But what command do I need to initiate to firstly save this into the property map, and then plot it, e.g. with the l1 level vertices sized proportionate to E.C in state.draw?
(Or I guess, consider a different scenario where I want to attribute value to the hierarchical edges, and then plot that accordingly).
I couldn't see any documentation for this on the website other than that hvprop does exist, but if there was such as an example please do point me to it...?
On 15/08/2019 10:31, Tiago de Paula Peixoto wrote:
Am 07.08.19 um 14:20 schrieb James Ruffle:Hi Tiago, Thanks for this. Unfortunately my machine seems to fail with calling state.draw() for interactive visualisation which makes it difficult to understand exactly how this interacts. I am running it from the docker image, on macOS 10.14.16. Following your instructions on installation page; docker pull tiagopeixoto/graph-tool xhost +local: docker run -ti -u user -w /home/user --rm -e DISPLAY=$DISPLAY -v /tmp/.X11-unix:/tmp/.X11-unix tiagopeixoto/graph-tool ipython from graph_tool.all import * ; import graph_tool.all as gt ; Unable to init server: Could not connect: Connection refused (ipython:1): Gdk-CRITICAL **: 12:54:59.581: gdk_cursor_new_for_display: assertion 'GDK_IS_DISPLAY (display)’ failed (ipython:1): Gdk-CRITICAL **: 12:54:59.598: gdk_cursor_new_for_display: assertion 'GDK_IS_DISPLAY (display)’ failed g = gt.collection.data["celegansneural”] state = gt.minimize_nested_blockmodel_dl(g) state.draw() RuntimeError: Gtk couldn't be initialized. Use Gtk.init_check() if you want to handle this case. Do you have a suggestion how to resolve this?In MacOS I believe you need to have XQuartz installed: https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fen.lmgtfy.com%2F%3Fq%3Dmacos%2Bdocker%2Bconnecting%2Bto%2Bx%2Bserver&data=02%7C01%7Cj.ruffle%40qmul.ac.uk%7C5866439148a441907c9d08d721635a08%7C569df091b01340e386eebd9cb9e25814%7C0%7C0%7C637014582917811452&sdata=B3VgUw7w1j%2FSKbVppFXmxcoaTRzThxSG9czWNO%2B7Nmc%3D&reserved=0 Best, Tiago
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