Hi all, I’ve got a very large undirected graph (407 mil vertices, 522 mil edges, 2 vertex properties) that consists of multiple connected components (ccs). I noticed that when I call e.g. dfs_iterator or dfs_search on a source vertex, it takes around 1 – 2 seconds to return. The upper bound is depending on the component’s size, but the lower bound seems to be the same for all components. I have created a test graph with only a subset of the ccs of the large graph. Iterating the same cc in the test graph takes only a couple of milliseconds instead of ≥ 1 s. This tells me, that the dfs/bfs iterators have some kind of overhead depending on the complete graph size. I wrote a DFSVisitor that collects some timings during iteration to better see which steps consume time. Here are the results (rounded for readability): In [30]: test_dfs(graph, graph.vertex(0)) # first time the function is entered visitor.start_vertex_t 2.3e-05 s visitor.first_discover_vertex_t 0.18 s visitor.first_examine_edge_t 0.18 s visitor.first_tree_edge_t 0.63 s visitor.first_finish_vertex_t 0.63 s # average time between last 2 calls of the function visitor.discover_vertex_t 0.002 s visitor.examine_edge_t 0.001 s visitor.tree_edge_t 0.001 s visitor.finish_vertex_t 0.001 s # last time finished() is called visitor.finished 1.3 s # number of times the functions were called visitor.discovered_vertices 565 visitor.examined_edges 1978 visitor.tree_edges 564 visitor.finished_vertices 565 took 1.38 s As you can see, start_vertex is called immediately, but then it takes a very long time until the other Visitor functions are called for the first time after which the calls are faster again, but still quite slow. On the test graph I think I can see the same trend with smaller numbers because the graph is smaller: In [30]: test_dfs(test_graph, test_graph.vertex(0)) # first time the function is entered visitor.start_vertex_t 2e-05 s visitor.first_discover_vertex_t 0.0007 s visitor.first_examine_edge_t 0.0007 s visitor.first_tree_edge_t 0.0016s visitor.first_finish_vertex_t 0.0015 s # average time between last 2 calls of the function visitor.discover_vertex_t 1.6e-05 s visitor.examine_edge_t 3.7e-06 s visitor.tree_edge_t 1.4e-05 s visitor.finish_vertex_t 1.4e-05 s # last time finished() is called visitor.finished 0.01 s # number of times the functions were called visitor.discovered_vertices 565 visitor.examined_edges 1978 visitor.tree_edges 564 visitor.finished_vertices 565 took 0.01 s If I iterate the same cc in the large graph in python, it takes me only a couple of milliseconds: def dfs(graph, vertex_idx): t = time.time() todo = {vertex_idx} visited = set() while len(todo) > 0: next_vertex = todo.pop() visited.add(next_vertex) todo |= set(graph.iter_all_neighbors(graph.vertex(next_vertex))) - visited print(f'dfs took {time.time() - t} s') return visited In [38]: d = dfs(graph, 0) dfs took 0.01653146743774414 s Because of graph_tool’s slowness for small ccs I ended up writing a heuristic that always attempts a naive python dfs first, but aborts if 1 second is exceeded and only then does the graph_tool dfs. Anyone know what’s going on here? Best My-Tien