Hi, I'm sorry, I completely missed the gcc >= 4.8 requirement. So, I will try to install a newer version of gcc and try again. Regards, On Thu, Apr 23, 2015 at 4:21 PM, Santiago Videla <santiago.videla@gmail.com> wrote:
Hi,
I'm trying to compile from sources but I'm getting some errors. While "configure" went well on checking all dependecies, when I run make I got a bunch of errors compiling graph_blockmodel.lo (full traceback has 1.1MB, so I included only the end of it below)
Any idea of what could be the issue? Does anyone compiled graph-tool on Debian 7?
Regards,
$ ./configure --enable-openmp checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking for library containing strerror... none required checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking for gcc option to accept ISO C99... unsupported checking for gcc option to accept ISO C89... (cached) none needed checking for gcc option to accept ISO Standard C... (cached) none needed checking how to run the C++ preprocessor... g++ -E checking for ANSI C header files... (cached) yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking target system type... x86_64-unknown-linux-gnu checking whether to enable debug info...... no checking whether C++ compiler supports -std=gnu++11... yes checking whether to enable function inlining...... yes checking whether to enable optimizations...... yes checking whether to enable symbol visibility manipulation...... yes checking whether to enable parallel algorithms with openmp...... yes checking whether to enable cairo drawing...... yes checking for main in -lm... yes checking for main in -lbz2... no checking for main in -lexpat... yes ================ Detecting python ================ checking for a Python interpreter with version >= 2.6... python checking for python... /usr/bin/python checking for python version... 2.7 checking for python platform... linux2 checking for python script directory... ${prefix}/lib/python2.7/dist-packages checking for python extension module directory... ${exec_prefix}/lib/python2.7/dist-packages checking for python2.7... (cached) /usr/bin/python checking for a version of Python >= '2.1.0'... yes checking for a version of Python == '2.7.3'... yes checking for the distutils Python package... yes checking for Python include path... -I/usr/include/python2.7 checking for Python library path... -L/usr/lib -lpython2.7 checking for Python site-packages path... /usr/lib/python2.7/dist-packages checking python extra libraries... -lpthread -ldl -lutil -lm checking python extra linking flags... -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions checking consistency of all components of python development environment... yes graph-tool will be installed at: /usr/lib/python2.7/dist-packages =========================== Using python version: 2.7.3 =========================== checking for boostlib >= 1.53.0... yes checking whether the Boost::Python library is available... yes checking for exit in -lboost_python... yes checking whether the Boost::Iostreams library is available... yes checking for exit in -lboost_iostreams... yes checking whether the Boost::Regex library is available... yes checking for exit in -lboost_regex... yes checking whether the Boost::Graph library is available... yes checking for exit in -lboost_graph... yes checking for main in -lCGAL... yes checking whether to cgal debbuging with valgrind...... no checking python module: numpy... yes checking for /usr/lib/pymodules/python2.7/numpy/core/include/numpy/arrayobject.h... yes checking python module: scipy... yes checking /usr/lib/python2.7/dist-packages/scipy/weave/scxx/object.h usability... yes checking /usr/lib/python2.7/dist-packages/scipy/weave/scxx/object.h presence... yes checking for /usr/lib/python2.7/dist-packages/scipy/weave/scxx/object.h... yes checking expat.h usability... yes checking expat.h presence... yes checking for expat.h... yes checking CGAL/version.h usability... yes checking CGAL/version.h presence... yes checking for CGAL/version.h... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for CAIROMM... yes checking python module: cairo... yes checking pycairo/pycairo.h usability... yes checking pycairo/pycairo.h presence... yes checking for pycairo/pycairo.h... yes checking whether to enable sparsehash...... yes checking for SPARSEHASH... yes checking sparsehash/dense_hash_set usability... yes checking sparsehash/dense_hash_set presence... yes checking for sparsehash/dense_hash_set... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/graph/Makefile config.status: creating src/graph/centrality/Makefile config.status: creating src/graph/clustering/Makefile config.status: creating src/graph/community/Makefile config.status: creating src/graph/correlations/Makefile config.status: creating src/graph/draw/Makefile config.status: creating src/graph/flow/Makefile config.status: creating src/graph/generation/Makefile config.status: creating src/graph/layout/Makefile config.status: creating src/graph/search/Makefile config.status: creating src/graph/spectral/Makefile config.status: creating src/graph/stats/Makefile config.status: creating src/graph/topology/Makefile config.status: creating src/graph/util/Makefile config.status: creating src/graph_tool/Makefile config.status: creating config.h config.status: config.h is unchanged config.status: executing depfiles commands config.status: executing libtool commands configure: Modifying libtool to correctly link libstdc++ before anything else...
$ make .... .... .... Making all in community make[4]: Entering directory `/home/santiago/Downloads/graph-tool-2.2.42/src/graph/community' CXX graph_blockmodel.lo .... .... .... graph_blockmodel.cc:430:76: required from here graph_blockmodel.cc:336:105: error: no matching function for call to ‘graph_tool::ConstantPropertyMap<std::array<int, 1ul>, long unsigned int>::ConstantPropertyMap(<brace-enclosed initializer list>)’ graph_blockmodel.cc:336:105: note: candidates are: In file included from ./../graph.hh:35:0, from ./../graph_filtering.hh:21, from graph_blockmodel.cc:28: ./../graph_properties.hh:606:5: note: graph_tool::ConstantPropertyMap<Value, Key>::ConstantPropertyMap() [with Value = std::array<int, 1ul>; Key = long unsigned int] ./../graph_properties.hh:606:5: note: candidate expects 0 arguments, 1 provided ./../graph_properties.hh:605:5: note: graph_tool::ConstantPropertyMap<Value, Key>::ConstantPropertyMap(const value_type&) [with Value = std::array<int, 1ul>; Key = long unsigned int; graph_tool::ConstantPropertyMap<Value, Key>::value_type = std::array<int, 1ul>] ./../graph_properties.hh:605:5: note: no known conversion for argument 1 from ‘<brace-enclosed initializer list>’ to ‘const value_type& {aka const std::array<int, 1ul>&}’ ./../graph_properties.hh:596:7: note: constexpr graph_tool::ConstantPropertyMap<std::array<int, 1ul>, long unsigned int>::ConstantPropertyMap(const graph_tool::ConstantPropertyMap<std::array<int, 1ul>, long unsigned int>&) ./../graph_properties.hh:596:7: note: no known conversion for argument 1 from ‘<brace-enclosed initializer list>’ to ‘const graph_tool::ConstantPropertyMap<std::array<int, 1ul>, long unsigned int>&’ ./../graph_properties.hh:596:7: note: constexpr graph_tool::ConstantPropertyMap<std::array<int, 1ul>, long unsigned int>::ConstantPropertyMap(graph_tool::ConstantPropertyMap<std::array<int, 1ul>, long unsigned int>&&) ./../graph_properties.hh:596:7: note: no known conversion for argument 1 from ‘<brace-enclosed initializer list>’ to ‘graph_tool::ConstantPropertyMap<std::array<int, 1ul>, long unsigned int>&&’ make[4]: *** [graph_blockmodel.lo] Error 1 make[4]: Leaving directory `/home/santiago/Downloads/graph-tool-2.2.42/src/graph/community' make[3]: *** [all-recursive] Error 1 make[3]: Leaving directory `/home/santiago/Downloads/graph-tool-2.2.42/src/graph' make[2]: *** [all-recursive] Error 1 make[2]: Leaving directory `/home/santiago/Downloads/graph-tool-2.2.42/src' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/home/santiago/Downloads/graph-tool-2.2.42' make: *** [all] Error 2
-- Santiago Videla http://www.linkedin.com/in/svidela
-- Santiago Videla http://www.linkedin.com/in/svidela