Hello I am installing graph tools in my Biolinux 7 machine.. I installed boost and the commands used for compilation are % sudo ./bootstrap.sh [12:38PM] [sudo] password for oilseed31: Building Boost.Build engine with toolset gcc... tools/build/src/engine/bin.linuxx86_64/b2 Detecting Python version... 2.7 Detecting Python root... /usr Unicode/ICU support for Boost.Regex?... /usr Backing up existing Boost.Build configuration in project-config.jam.2 Generating Boost.Build configuration in project-config.jam... Bootstrapping is done. To build, run: ./b2 To adjust configuration, edit 'project-config.jam'. Further information: - Command line help: ./b2 --help - Getting started guide: http://www.boost.org/more/getting_started/unix-variants.html - Boost.Build documentation: http://www.boost.org/boost-build2/doc/html/index.html % sudo ./b2 [12:39PM] Building the Boost C++ Libraries. Performing configuration checks - 32-bit : no (cached) - 64-bit : yes (cached) - arm : no (cached) - mips1 : no (cached) - power : no (cached) - sparc : no (cached) - x86 : yes (cached) - lockfree boost::atomic_flag : yes (cached) - has_icu builds : yes (cached) warning: Graph library does not contain MPI-based parallel components. note: to enable them, add "using mpi ;" to your user-config.jam - zlib : yes (cached) - iconv (libc) : yes (cached) - icu : yes (cached) - compiler-supports-ssse3 : yes (cached) - compiler-supports-avx2 : no (cached) - gcc visibility : yes (cached) - long double support : yes (cached) warning: skipping optional Message Passing Interface (MPI) library. note: to enable MPI support, add "using mpi ;" to user-config.jam. note: to suppress this message, pass "--without-mpi" to bjam. note: otherwise, you can safely ignore this message. - zlib : yes (cached) Component configuration: - atomic : building - chrono : building - container : building - context : building - coroutine : building - date_time : building - exception : building - filesystem : building - graph : building - graph_parallel : building - iostreams : building - locale : building - log : building - math : building - mpi : building - program_options : building - python : building - random : building - regex : building - serialization : building - signals : building - system : building - test : building - thread : building - timer : building - wave : building ...patience... ...patience... ...patience... ...patience... ...patience... ...patience... ...found 13350 targets... The Boost C++ Libraries were successfully built! The following directory should be added to compiler include paths: /home/oilseed31/Downloads/boost_1_57_0 The following directory should be added to linker library paths: /home/oilseed31/Downloads/boost_1_57_0/stage/lib But when I installed graphtool the commands used are % ./configure [ 9:46AM] checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking for library containing strerror... none required checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking for gcc option to accept ISO C99... unsupported checking for gcc option to accept ISO C89... (cached) none needed checking for gcc option to accept ISO Standard C... (cached) none needed checking how to run the C++ preprocessor... g++ -E checking for ANSI C header files... (cached) yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking target system type... x86_64-unknown-linux-gnu checking whether to enable debug info...... no checking whether C++ compiler supports -std=gnu++11... no checking whether to enable function inlining...... yes checking whether to enable optimizations...... yes checking whether to enable symbol visibility manipulation...... yes checking whether to enable parallel algorithms with openmp...... no checking whether to enable cairo drawing...... yes checking for main in -lm... yes checking for main in -lbz2... yes checking for main in -lexpat... yes ================ Detecting python ================ checking for a Python interpreter with version >= 2.6... python checking for python... /usr/bin/python checking for python version... 2.7 checking for python platform... linux2 checking for python script directory... ${prefix}/lib/python2.7/dist-packages checking for python extension module directory... ${exec_prefix}/lib/python2.7/dist-packages checking for python2.7... (cached) /usr/bin/python checking for a version of Python >= '2.1.0'... yes checking for a version of Python == '2.7.3'... yes checking for the distutils Python package... yes checking for Python include path... -I/usr/include/python2.7 checking for Python library path... -L/usr/lib -lpython2.7 checking for Python site-packages path... /usr/lib/python2.7/dist-packages checking python extra libraries... -lpthread -ldl -lutil -lm checking python extra linking flags... -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions checking consistency of all components of python development environment... yes graph-tool will be installed at: /usr/lib/python2.7/dist-packages =========================== Using python version: 2.7.3 =========================== checking for boostlib >= 1.53.0... yes checking whether the Boost::Python library is available... yes checking for exit in -lboost_python... yes checking whether the Boost::Iostreams library is available... yes checking for exit in -lboost_iostreams... yes checking whether the Boost::Regex library is available... yes checking for exit in -lboost_regex... yes checking whether the Boost::Graph library is available... yes checking for exit in -lboost_graph... yes checking for main in -lCGAL... yes checking whether to cgal debbuging with valgrind...... no checking python module: numpy... yes checking for /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h... yes checking python module: scipy... yes checking /usr/lib/python2.7/dist-packages/scipy/weave/scxx/object.h usability... yes checking /usr/lib/python2.7/dist-packages/scipy/weave/scxx/object.h presence... yes checking for /usr/lib/python2.7/dist-packages/scipy/weave/scxx/object.h... yes checking expat.h usability... yes checking expat.h presence... yes checking for expat.h... yes checking CGAL/version.h usability... yes checking CGAL/version.h presence... yes checking for CGAL/version.h... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for CAIROMM... no configure: error: Package requirements (cairomm-1.0) were not met: Package expat was not found in the pkg-config search path. Perhaps you should add the directory containing `expat.pc' to the PKG_CONFIG_PATH environment variable Package 'expat', required by 'Fontconfig', not found Consider adjusting the PKG_CONFIG_PATH environment variable if you installed software in a non-standard prefix. Alternatively, you may set the environment variables CAIROMM_CFLAGS and CAIROMM_LIBS to avoid the need to call pkg-config. See the pkg-config man page for more details. % ./configure --disable-cairo [ 9:50AM] checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking for library containing strerror... none required checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking for gcc option to accept ISO C99... unsupported checking for gcc option to accept ISO C89... (cached) none needed checking for gcc option to accept ISO Standard C... (cached) none needed checking how to run the C++ preprocessor... g++ -E checking for ANSI C header files... (cached) yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking target system type... x86_64-unknown-linux-gnu checking whether to enable debug info...... no checking whether C++ compiler supports -std=gnu++11... no checking whether to enable function inlining...... yes checking whether to enable optimizations...... yes checking whether to enable symbol visibility manipulation...... yes checking whether to enable parallel algorithms with openmp...... no checking whether to enable cairo drawing...... no checking for main in -lm... yes checking for main in -lbz2... yes checking for main in -lexpat... yes ================ Detecting python ================ checking for a Python interpreter with version >= 2.6... python checking for python... /usr/bin/python checking for python version... 2.7 checking for python platform... linux2 checking for python script directory... ${prefix}/lib/python2.7/dist-packages checking for python extension module directory... ${exec_prefix}/lib/python2.7/dist-packages checking for python2.7... (cached) /usr/bin/python checking for a version of Python >= '2.1.0'... yes checking for a version of Python == '2.7.3'... yes checking for the distutils Python package... yes checking for Python include path... -I/usr/include/python2.7 checking for Python library path... -L/usr/lib -lpython2.7 checking for Python site-packages path... /usr/lib/python2.7/dist-packages checking python extra libraries... -lpthread -ldl -lutil -lm checking python extra linking flags... -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions checking consistency of all components of python development environment... yes graph-tool will be installed at: /usr/lib/python2.7/dist-packages =========================== Using python version: 2.7.3 =========================== checking for boostlib >= 1.53.0... yes checking whether the Boost::Python library is available... yes checking for exit in -lboost_python... yes checking whether the Boost::Iostreams library is available... yes checking for exit in -lboost_iostreams... yes checking whether the Boost::Regex library is available... yes checking for exit in -lboost_regex... yes checking whether the Boost::Graph library is available... yes checking for exit in -lboost_graph... yes checking for main in -lCGAL... yes checking whether to cgal debbuging with valgrind...... no checking python module: numpy... yes checking for /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h... yes checking python module: scipy... yes checking /usr/lib/python2.7/dist-packages/scipy/weave/scxx/object.h usability... yes checking /usr/lib/python2.7/dist-packages/scipy/weave/scxx/object.h presence... yes checking for /usr/lib/python2.7/dist-packages/scipy/weave/scxx/object.h... yes checking expat.h usability... yes checking expat.h presence... yes checking for expat.h... yes checking CGAL/version.h usability... yes checking CGAL/version.h presence... yes checking for CGAL/version.h... yes checking whether to enable sparsehash...... yes checking for SPARSEHASH... no not found by pkgconfig, trying default... checking sparsehash/dense_hash_set usability... no checking sparsehash/dense_hash_set presence... no checking for sparsehash/dense_hash_set... no configure: error: sparsehash headers not found % ./configure --disable-sparsehash --disable-cairo [ 9:51AM] checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking for library containing strerror... none required checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking for gcc option to accept ISO C99... unsupported checking for gcc option to accept ISO C89... (cached) none needed checking for gcc option to accept ISO Standard C... (cached) none needed checking how to run the C++ preprocessor... g++ -E checking for ANSI C header files... (cached) yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking target system type... x86_64-unknown-linux-gnu checking whether to enable debug info...... no checking whether C++ compiler supports -std=gnu++11... no checking whether to enable function inlining...... yes checking whether to enable optimizations...... yes checking whether to enable symbol visibility manipulation...... yes checking whether to enable parallel algorithms with openmp...... no checking whether to enable cairo drawing...... no checking for main in -lm... yes checking for main in -lbz2... yes checking for main in -lexpat... yes ================ Detecting python ================ checking for a Python interpreter with version >= 2.6... python checking for python... /usr/bin/python checking for python version... 2.7 checking for python platform... linux2 checking for python script directory... ${prefix}/lib/python2.7/dist-packages checking for python extension module directory... ${exec_prefix}/lib/python2.7/dist-packages checking for python2.7... (cached) /usr/bin/python checking for a version of Python >= '2.1.0'... yes checking for a version of Python == '2.7.3'... yes checking for the distutils Python package... yes checking for Python include path... -I/usr/include/python2.7 checking for Python library path... -L/usr/lib -lpython2.7 checking for Python site-packages path... /usr/lib/python2.7/dist-packages checking python extra libraries... -lpthread -ldl -lutil -lm checking python extra linking flags... -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions checking consistency of all components of python development environment... yes graph-tool will be installed at: /usr/lib/python2.7/dist-packages =========================== Using python version: 2.7.3 =========================== checking for boostlib >= 1.53.0... yes checking whether the Boost::Python library is available... yes checking for exit in -lboost_python... yes checking whether the Boost::Iostreams library is available... yes checking for exit in -lboost_iostreams... yes checking whether the Boost::Regex library is available... yes checking for exit in -lboost_regex... yes checking whether the Boost::Graph library is available... yes checking for exit in -lboost_graph... yes checking for main in -lCGAL... yes checking whether to cgal debbuging with valgrind...... no checking python module: numpy... yes checking for /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h... yes checking python module: scipy... yes checking /usr/lib/python2.7/dist-packages/scipy/weave/scxx/object.h usability... yes checking /usr/lib/python2.7/dist-packages/scipy/weave/scxx/object.h presence... yes checking for /usr/lib/python2.7/dist-packages/scipy/weave/scxx/object.h... yes checking expat.h usability... yes checking expat.h presence... yes checking for expat.h... yes checking CGAL/version.h usability... yes checking CGAL/version.h presence... yes checking for CGAL/version.h... yes checking whether to enable sparsehash...... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/graph/Makefile config.status: creating src/graph/centrality/Makefile config.status: creating src/graph/clustering/Makefile config.status: creating src/graph/community/Makefile config.status: creating src/graph/correlations/Makefile config.status: creating src/graph/draw/Makefile config.status: creating src/graph/flow/Makefile config.status: creating src/graph/generation/Makefile config.status: creating src/graph/layout/Makefile config.status: creating src/graph/search/Makefile config.status: creating src/graph/spectral/Makefile config.status: creating src/graph/stats/Makefile config.status: creating src/graph/topology/Makefile config.status: creating src/graph/util/Makefile config.status: creating src/graph_tool/Makefile config.status: creating config.h config.status: config.h is unchanged config.status: executing depfiles commands config.status: executing libtool commands configure: Modifying libtool to correctly link libstdc++ before anything else.. sudo make ::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0l>, LastIterator = boost::mpl::v_iter<boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 6l>, TransformFunc = boost::mpl::identity<mpl_::na>, F = boost::mpl::inner_loop<boost::mpl::dispatch<boost::mpl::selected_types<graph_tool::detail::action_wrap<std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, mpl_::bool_<false> > >, boost::adj_list<long unsigned int>*>, boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0> >]’ /usr/local/include/boost/mpl/for_each.hpp:104:5: instantiated from ‘void boost::mpl::for_each(F, Sequence*, TransformOp*) [with Sequence = boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, TransformOp = boost::mpl::identity<mpl_::na>, F = boost::mpl::inner_loop<boost::mpl::dispatch<boost::mpl::selected_types<graph_tool::detail::action_wrap<std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, mpl_::bool_<false> > >, boost::adj_list<long unsigned int>*>, boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0> >]’ /usr/local/include/boost/mpl/for_each.hpp:118:3: instantiated from ‘void boost::mpl::for_each(F, Sequence*) [with Sequence = boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, F = boost::mpl::inner_loop<boost::mpl::dispatch<boost::mpl::selected_types<graph_tool::detail::action_wrap<std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, mpl_::bool_<false> > >, boost::adj_list<long unsigned int>*>, boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0> >]’ ./../mpl_nested_loop.hh:100:5: instantiated from ‘void boost::mpl::nested_for_each_imp(Action) [with TR1 = boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, TRS = {boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0>}, Action = boost::mpl::dispatch<boost::mpl::selected_types<graph_tool::detail::action_wrap<std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, mpl_::bool_<false> > >, boost::adj_list<long unsigned int>*>]’ ./../mpl_nested_loop.hh:91:9: instantiated from ‘void boost::mpl::inner_loop<Action, TRS>::operator()(T) const [with T = boost::adj_list<long unsigned int>*, Action = boost::mpl::dispatch<boost::mpl::selected_types<graph_tool::detail::action_wrap<std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, mpl_::bool_<false> > >
, TRS = {boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0>}]’ /usr/local/include/boost/mpl/for_each.hpp:78:9: instantiated from ‘static void boost::mpl::aux::for_each_impl<false>::execute(Iterator*, LastIterator*, TransformFunc*, F) [with Iterator = boost::mpl::v_iter<graph_tool::detail::graph_action<std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, graph_tool::detail::all_graph_views, mpl_::bool_<false>, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0> ::graph_view_pointers, 0l>, LastIterator = boost::mpl::v_iter<graph_tool::detail::graph_action<std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, graph_tool::detail::all_graph_views, mpl_::bool_<false>, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0> ::graph_view_pointers, 6l>, TransformFunc = boost::mpl::identity<mpl_::na>, F = boost::mpl::inner_loop<boost::mpl::dispatch<boost::mpl::selected_types<graph_tool::detail::action_wrap<std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, mpl_::bool_<false> > > , boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0> >]’ /usr/local/include/boost/mpl/for_each.hpp:104:5: instantiated from ‘void boost::mpl::for_each(F, Sequence*, TransformOp*) [with Sequence = graph_tool::detail::graph_action<std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, graph_tool::detail::all_graph_views, mpl_::bool_<false>, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0> ::graph_view_pointers, TransformOp = boost::mpl::identity<mpl_::na>, F = boost::mpl::inner_loop<boost::mpl::dispatch<boost::mpl::selected_types<graph_tool::detail::action_wrap<std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, mpl_::bool_<false> > > , boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0> >]’ /usr/local/include/boost/mpl/for_each.hpp:118:3: instantiated from ‘void boost::mpl::for_each(F, Sequence*) [with Sequence = graph_tool::detail::graph_action<std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, graph_tool::detail::all_graph_views, mpl_::bool_<false>, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0> ::graph_view_pointers, F = boost::mpl::inner_loop<boost::mpl::dispatch<boost::mpl::selected_types<graph_tool::detail::action_wrap<std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, mpl_::bool_<false> > > , boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0> >]’ ./../mpl_nested_loop.hh:100:5: instantiated from ‘void boost::mpl::nested_for_each_imp(Action) [with TR1 = graph_tool::detail::graph_action<std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, graph_tool::detail::all_graph_views, mpl_::bool_<false>, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0> ::graph_view_pointers, TRS = {boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0>}, Action = boost::mpl::dispatch<boost::mpl::selected_types<graph_tool::detail::action_wrap<std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, mpl_::bool_<false> > > ]’ ./../mpl_nested_loop.hh:113:5: instantiated from ‘void boost::mpl::nested_for_each(Action) [with TRS = {graph_tool::detail::graph_action<std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, graph_tool::detail::all_graph_views, mpl_::bool_<false>, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0> ::graph_view_pointers, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0>}, Action = boost::mpl::selected_types<graph_tool::detail::action_wrap<std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, mpl_::bool_<false> > >]’ ./../graph_filtering.hh:489:9: instantiated from ‘void graph_tool::detail::graph_action<Action, GraphViews, Wrap, TRS>::operator()(Args&& ...) const [with Args = {boost::any&, boost::any&}, Action = std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, GraphViews = graph_tool::detail::all_graph_views, Wrap = mpl_::bool_<false>, TRS = {boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0>}]’ graph_all_distances.cc:80:26: instantiated from here /usr/include/c++/4.6/bits/stl_algobase.h:546:6: error: use of deleted function ‘boost::detail::stored_edge_property<Vertex, Property>::self& boost::detail::stored_edge_property<Vertex, Property>::operator=(boost::detail::stored_edge_property<Vertex, Property>::self&&) [with Vertex = long unsigned int, Property = boost::property<boost::edge_weight_t, long double, boost::property<boost::edge_weight2_t, long double, boost::no_property> >, boost::detail::stored_edge_property<Vertex, Property>::self = boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, long double, boost::property<boost::edge_weight2_t, long double, boost::no_property> > ]’ At global scope: cc1plus: warning: unrecognised command line option "-Wno-unused-local-typedefs" [enabled by default] make[4]: *** [graph_a ll_distances.lo] Error 1 make[4]: Leaving directory `/home/oilseed31/Downloads/graph-tool-2.2.36/src/graph/topology' make[3]: *** [all-recursive] Error 1 make[3]: Leaving directory `/home/oilseed31/Downloads/graph-tool-2.2.36/src/graph' make[2]: *** [all-recursive] Error 1 make[2]: Leaving directory `/home/oilseed31/Downloads/graph-tool-2.2.36/src' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/home/oilseed31/Downloads/graph-tool-2.2.36' make: *** [all] Error 2
Kindly fix this error. I need graph tools for a software DIRT ( http://www.plant-image-analysis.org/software/dirt) Regards, *Sakshi Bharti* *Research fellow * Department of Plant Breeding and Genetics (Oilseeds Section) Punjab Agricultural University Ludhiana-141004 India